tunacell
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Introduction
Introduction to
tunacell
Install
10 minute tutorial
User manual
Input file format
Setting up your analysis
Plotting samples
Statistics of the dynamics
More details about
Filters
Tunacell’s data model
Numerical simulations in
tunacell
API
Experiment
Parser
Observable
Filters
Analysis of the dynamics
Plotting dynamic analysis
tunacell
Docs
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Index
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Index
A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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O
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P
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R
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S
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T
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U
A
abspath (tunacell.base.experiment.Experiment attribute)
add_sample() (tunacell.base.parser.Parser method)
analysis_path (tunacell.base.experiment.Experiment attribute)
as_latex_string (tunacell.base.observable.Observable attribute)
as_string_table() (tunacell.base.observable.Observable method)
as_timelapse() (tunacell.base.observable.Observable method)
B
bounded() (in module tunacell.filters.main)
C
clear_samples() (tunacell.base.parser.Parser method)
compute_bivariate() (in module tunacell.stats.api)
compute_stationary() (in module tunacell.stats.api)
compute_stationary_bivariate() (in module tunacell.stats.api)
compute_univariate() (in module tunacell.stats.api)
containers (tunacell.base.experiment.Experiment attribute)
count_items() (in module tunacell.base.experiment)
(tunacell.base.experiment.Experiment method)
D
datatype (tunacell.base.experiment.Experiment attribute)
E
Experiment (class in tunacell.base.experiment)
F
filetype (tunacell.base.experiment.Experiment attribute)
FiletypeError
FilterAND (class in tunacell.filters.main)
FilterArgError
FilterBoolean (class in tunacell.filters.main)
FilterCell (class in tunacell.filters.cells)
FilterCellAny (class in tunacell.filters.cells)
FilterCellIDbound (class in tunacell.filters.cells)
FilterCellIDparity (class in tunacell.filters.cells)
FilterCompleteCycle (class in tunacell.filters.cells)
FilterCycleFrames (class in tunacell.filters.cells)
FilterCycleSpanIncluded (class in tunacell.filters.cells)
FilterData (class in tunacell.filters.cells)
FilterDaughters (class in tunacell.filters.cells)
FilterError
FilterGeneral (class in tunacell.filters.main)
FilterHasParent (class in tunacell.filters.cells)
FilterLabelError
FilterLengthIncrement (class in tunacell.filters.cells)
FilterNOT (class in tunacell.filters.main)
FilterObservableBound (class in tunacell.filters.cells)
FilterOR (class in tunacell.filters.main)
FilterParamsError
FilterSet (class in tunacell.filters.main)
FilterSymmetricDivision (class in tunacell.filters.cells)
FilterTimeInCycle (class in tunacell.filters.cells)
FilterTRUE (class in tunacell.filters.main)
FilterTypeError
fset (tunacell.base.experiment.Experiment attribute)
,
[1]
func() (tunacell.filters.cells.FilterCellAny method)
(tunacell.filters.cells.FilterCellIDbound method)
(tunacell.filters.cells.FilterCellIDparity method)
(tunacell.filters.cells.FilterCompleteCycle method)
(tunacell.filters.cells.FilterCycleFrames method)
(tunacell.filters.cells.FilterCycleSpanIncluded method)
(tunacell.filters.cells.FilterData method)
(tunacell.filters.cells.FilterDaughters method)
(tunacell.filters.cells.FilterHasParent method)
(tunacell.filters.cells.FilterLengthIncrement method)
(tunacell.filters.cells.FilterObservableBound method)
(tunacell.filters.cells.FilterSymmetricDivision method)
(tunacell.filters.cells.FilterTimeInCycle method)
(tunacell.filters.main.FilterAND method)
(tunacell.filters.main.FilterGeneral method)
(tunacell.filters.main.FilterNOT method)
(tunacell.filters.main.FilterOR method)
(tunacell.filters.main.FilterTRUE method)
FunctionalObservable (class in tunacell.base.observable)
G
get_cell() (tunacell.base.parser.Parser method)
get_colony() (tunacell.base.parser.Parser method)
get_container() (tunacell.base.experiment.Experiment method)
(tunacell.base.parser.Parser method)
get_lineage() (tunacell.base.parser.Parser method)
get_sample() (tunacell.base.parser.Parser method)
I
info() (tunacell.base.experiment.Experiment method)
info_samples() (tunacell.base.parser.Parser method)
iter_cells() (tunacell.base.experiment.Experiment method)
(tunacell.base.parser.Parser method)
iter_colonies() (tunacell.base.experiment.Experiment method)
(tunacell.base.parser.Parser method)
iter_containers() (tunacell.base.experiment.Experiment method)
(tunacell.base.parser.Parser method)
iter_lineages() (tunacell.base.experiment.Experiment method)
(tunacell.base.parser.Parser method)
L
label (tunacell.base.experiment.Experiment attribute)
(tunacell.base.observable.FunctionalObservable attribute)
(tunacell.base.observable.Observable attribute)
(tunacell.filters.main.FilterBoolean attribute)
(tunacell.filters.main.FilterGeneral attribute)
latexify() (tunacell.base.observable.FunctionalObservable method)
(tunacell.base.observable.Observable method)
load_bivariate() (in module tunacell.stats.api)
load_experiment() (tunacell.base.parser.Parser method)
load_from_string() (tunacell.base.observable.Observable method)
load_stationary() (in module tunacell.stats.api)
load_stationary_bivariate() (in module tunacell.stats.api)
load_univariate() (in module tunacell.stats.api)
M
metadata (tunacell.base.experiment.Experiment attribute)
mode (tunacell.base.observable.FunctionalObservable attribute)
O
obs (tunacell.filters.main.FilterGeneral attribute)
(tunacell.filters.main.FilterSet attribute)
Observable (class in tunacell.base.observable)
ObservableError
ObservableNameError
ObservableStringError
P
ParamsError
Parser (class in tunacell.base.parser)
ParsingExperimentError
period (tunacell.base.experiment.Experiment attribute)
,
[1]
plot_onepoint() (in module tunacell.plotting.dynamics)
plot_stationary() (in module tunacell.plotting.dynamics)
plot_twopoints() (in module tunacell.plotting.dynamics)
R
raw_text_export() (tunacell.base.experiment.Experiment method)
remove_sample() (tunacell.base.parser.Parser method)
S
set_filter() (tunacell.base.parser.Parser method)
set_observable_list() (in module tunacell.base.observable)
T
timing (tunacell.base.observable.FunctionalObservable attribute)
tunacell.base.experiment (module)
tunacell.base.observable (module)
tunacell.base.parser (module)
tunacell.filters.cells (module)
tunacell.filters.main (module)
tunacell.plotting.dynamics (module)
tunacell.stats.api (module)
U
unroll_func_obs() (in module tunacell.base.observable)
unroll_raw_obs() (in module tunacell.base.observable)
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